diff --git a/km3io/aanet.py b/km3io/aanet.py
index d8a71f9b862b0a578e505f9cd96519be4b8b7fbe..6823a5d1aabf514e02509f24a05fa8ab8f9c6d4e 100644
--- a/km3io/aanet.py
+++ b/km3io/aanet.py
@@ -550,14 +550,14 @@ class OfflineHit:
class OfflineTracks:
"""wrapper for offline tracks"""
def __init__(self, keys, values, fit_keys=None):
- """Summary
+ """wrapper for offline tracks
Parameters
----------
- keys : TYPE
- Description
- values : TYPE
- Description
+ keys : list of str
+ list of cropped tracks keys.
+ values : list of arrays
+ list of arrays containting tracks data.
fit_keys : None, optional
list of tracks fit information (not yet outsourced in offline
files).
diff --git a/notebooks/OfflineReader_tutorial.ipynb b/notebooks/OfflineReader_tutorial.ipynb
new file mode 100644
index 0000000000000000000000000000000000000000..cd1f495d4c3d81315ae1833df8ff6908ff9aa982
--- /dev/null
+++ b/notebooks/OfflineReader_tutorial.ipynb
@@ -0,0 +1,830 @@
+{
+ "cells": [
+ {
+ "cell_type": "code",
+ "execution_count": 3,
+ "metadata": {},
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "['/home/zineb/km3net/km3net/km3io/notebooks', '/home/zineb/miniconda3/envs/km3pipe/lib/python37.zip', '/home/zineb/miniconda3/envs/km3pipe/lib/python3.7', '/home/zineb/miniconda3/envs/km3pipe/lib/python3.7/lib-dynload', '', '/home/zineb/miniconda3/envs/km3pipe/lib/python3.7/site-packages', '/home/zineb/km3net/km3net/km3io', '/home/zineb/miniconda3/envs/km3pipe/lib/python3.7/site-packages/IPython/extensions', '/home/zineb/.ipython', '/home/zineb/km3net/km3net/km3io', '/home/zineb/km3net/km3net/km3io', '/home/zineb/km3net/km3net/km3io']\n"
+ ]
+ }
+ ],
+ "source": [
+ "# Add file to current python path\n",
+ "from pathlib import Path\n",
+ "import sys\n",
+ "sys.path.append(str(Path.cwd().parent))\n",
+ "Path.cwd()\n",
+ "print(sys.path)\n",
+ "\n",
+ "# test samples directory - aanet test file\n",
+ "files_path = Path.cwd().parent / 'tests/samples' \n",
+ "aanet_file = files_path / 'aanet_v2.0.0.root'"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 4,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "import km3io as ki"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 90,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "<km3io.aanet.OfflineReader at 0x7f249af32750>"
+ ]
+ },
+ "execution_count": 90,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r = ki.OfflineReader(aanet_file)\n",
+ "r"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 8,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "Events keys are:\n",
+ "\tid\n",
+ "\tdet_id\n",
+ "\tmc_id\n",
+ "\trun_id\n",
+ "\tmc_run_id\n",
+ "\tframe_index\n",
+ "\ttrigger_mask\n",
+ "\ttrigger_counter\n",
+ "\toverlays\n",
+ "\thits\n",
+ "\ttrks\n",
+ "\tw\n",
+ "\tw2list\n",
+ "\tw3list\n",
+ "\tmc_t\n",
+ "\tmc_hits\n",
+ "\tmc_trks\n",
+ "\tcomment\n",
+ "\tindex\n",
+ "\tflags\n",
+ "\tt.fSec\n",
+ "\tt.fNanoSec\n",
+ "Hits keys are:\n",
+ "\thits.id\n",
+ "\thits.dom_id\n",
+ "\thits.channel_id\n",
+ "\thits.tdc\n",
+ "\thits.tot\n",
+ "\thits.trig\n",
+ "\thits.pmt_id\n",
+ "\thits.t\n",
+ "\thits.a\n",
+ "\thits.pos.x\n",
+ "\thits.pos.y\n",
+ "\thits.pos.z\n",
+ "\thits.dir.x\n",
+ "\thits.dir.y\n",
+ "\thits.dir.z\n",
+ "\thits.pure_t\n",
+ "\thits.pure_a\n",
+ "\thits.type\n",
+ "\thits.origin\n",
+ "\thits.pattern_flags\n",
+ "Tracks keys are:\n",
+ "\ttrks.fUniqueID\n",
+ "\ttrks.fBits\n",
+ "\ttrks.id\n",
+ "\ttrks.pos.x\n",
+ "\ttrks.pos.y\n",
+ "\ttrks.pos.z\n",
+ "\ttrks.dir.x\n",
+ "\ttrks.dir.y\n",
+ "\ttrks.dir.z\n",
+ "\ttrks.t\n",
+ "\ttrks.E\n",
+ "\ttrks.len\n",
+ "\ttrks.lik\n",
+ "\ttrks.type\n",
+ "\ttrks.rec_type\n",
+ "\ttrks.rec_stages\n",
+ "\ttrks.status\n",
+ "\ttrks.mother_id\n",
+ "\ttrks.fitinf\n",
+ "\ttrks.hit_ids\n",
+ "\ttrks.error_matrix\n",
+ "\ttrks.comment\n",
+ "Mc hits keys are:\n",
+ "\tmc_hits.id\n",
+ "\tmc_hits.dom_id\n",
+ "\tmc_hits.channel_id\n",
+ "\tmc_hits.tdc\n",
+ "\tmc_hits.tot\n",
+ "\tmc_hits.trig\n",
+ "\tmc_hits.pmt_id\n",
+ "\tmc_hits.t\n",
+ "\tmc_hits.a\n",
+ "\tmc_hits.pos.x\n",
+ "\tmc_hits.pos.y\n",
+ "\tmc_hits.pos.z\n",
+ "\tmc_hits.dir.x\n",
+ "\tmc_hits.dir.y\n",
+ "\tmc_hits.dir.z\n",
+ "\tmc_hits.pure_t\n",
+ "\tmc_hits.pure_a\n",
+ "\tmc_hits.type\n",
+ "\tmc_hits.origin\n",
+ "\tmc_hits.pattern_flags\n",
+ "Mc tracks keys are:\n",
+ "\tmc_trks.fUniqueID\n",
+ "\tmc_trks.fBits\n",
+ "\tmc_trks.id\n",
+ "\tmc_trks.pos.x\n",
+ "\tmc_trks.pos.y\n",
+ "\tmc_trks.pos.z\n",
+ "\tmc_trks.dir.x\n",
+ "\tmc_trks.dir.y\n",
+ "\tmc_trks.dir.z\n",
+ "\tmc_trks.t\n",
+ "\tmc_trks.E\n",
+ "\tmc_trks.len\n",
+ "\tmc_trks.lik\n",
+ "\tmc_trks.type\n",
+ "\tmc_trks.rec_type\n",
+ "\tmc_trks.rec_stages\n",
+ "\tmc_trks.status\n",
+ "\tmc_trks.mother_id\n",
+ "\tmc_trks.fitinf\n",
+ "\tmc_trks.hit_ids\n",
+ "\tmc_trks.error_matrix\n",
+ "\tmc_trks.comment"
+ ]
+ },
+ "execution_count": 8,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r.keys"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 15,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "<OfflineEvents: 10 parsed events>"
+ ]
+ },
+ "execution_count": 15,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r.events"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 12,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "10"
+ ]
+ },
+ "execution_count": 12,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "len(r.events)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 20,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "<ChunkedArray [1 2 3 ... 8 9 10] at 0x7f249eeb6f10>"
+ ]
+ },
+ "execution_count": 20,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r.events.id"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 21,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "<ChunkedArray [44 44 44 ... 44 44 44] at 0x7f249eeba050>"
+ ]
+ },
+ "execution_count": 21,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r.events.det_id"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 23,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "<ChunkedArray [182 183 202 ... 185 185 204] at 0x7f249eeba410>"
+ ]
+ },
+ "execution_count": 23,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r.events.frame_index"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 24,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "<ChunkedArray [176 125 318 ... 84 255 105] at 0x7f249eebaa10>"
+ ]
+ },
+ "execution_count": 24,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r.events.hits"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 33,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "<ChunkedArray [5.170483995038151 4.8283137373023015 5.762051382780177 ... 4.430816798843313 5.541263545158426 4.653960350157523] at 0x7f249b8ebb90>"
+ ]
+ },
+ "execution_count": 33,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "import numpy as np\n",
+ "np.log(r.events.hits)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 41,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "offline event:\n",
+ "\tid : 1\n",
+ "\tdet_id : 44\n",
+ "\tmc_id : 0\n",
+ "\trun_id : 5971\n",
+ "\tmc_run_id : 0\n",
+ "\tframe_index : 182\n",
+ "\ttrigger_mask : 22\n",
+ "\ttrigger_counter : 0\n",
+ "\toverlays : 60\n",
+ "\thits : 176\n",
+ "\ttrks : 56\n",
+ "\tw : []\n",
+ "\tw2list : []\n",
+ "\tw3list : []\n",
+ "\tmc_t : 0.0\n",
+ "\tmc_hits : 0\n",
+ "\tmc_trks : 0\n",
+ "\tcomment : b''\n",
+ "\tindex : 0\n",
+ "\tflags : 0\n",
+ "\tt_fSec : 1567036818\n",
+ "\tt_fNanoSec : 200000000"
+ ]
+ },
+ "execution_count": 41,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r.events[0]"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 47,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "60"
+ ]
+ },
+ "execution_count": 47,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r.events[0].overlays"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 48,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "176"
+ ]
+ },
+ "execution_count": 48,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r.events[0].hits"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 56,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "<ChunkedArray [[806451572 806451572 806451572 ... 809544061 809544061 809544061] [806451572 806451572 806451572 ... 809524432 809526097 809544061] [806451572 806451572 806451572 ... 809544061 809544061 809544061] ... [806451572 806455814 806465101 ... 809526097 809544058 809544061] [806455814 806455814 806455814 ... 809544061 809544061 809544061] [806455814 806455814 806455814 ... 809544058 809544058 809544061]] at 0x7f249eebac50>"
+ ]
+ },
+ "execution_count": 56,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r.hits.dom_id"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 61,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "<ChunkedArray [[24 30 22 ... 38 26 23] [29 26 22 ... 26 28 24] [27 19 13 ... 27 24 16] ... [22 22 9 ... 27 32 27] [30 32 17 ... 30 24 29] [27 41 36 ... 29 24 28]] at 0x7f249eec9050>"
+ ]
+ },
+ "execution_count": 61,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r.hits.tot"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 62,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "<OfflineHits: 176 parsed elements>"
+ ]
+ },
+ "execution_count": 62,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r[0].hits"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 68,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
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+ " 808981672, 808981672, 808981812, 808981812, 808981812, 808981864,\n",
+ " 808981864, 808982005, 808982005, 808982005, 808982018, 808982018,\n",
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+ " 809526097, 809544061, 809544061, 809544061, 809544061, 809544061,\n",
+ " 809544061, 809544061], dtype=int32)"
+ ]
+ },
+ "execution_count": 68,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r[0].hits.dom_id"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 74,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "offline hit:\n",
+ "\tid : 0\n",
+ "\tdom_id : 806451572\n",
+ "\tchannel_id : 8\n",
+ "\ttdc : 0\n",
+ "\ttot : 24\n",
+ "\ttrig : 1\n",
+ "\tpmt_id : 0\n",
+ "\tt : 70104010.0\n",
+ "\ta : 0.0\n",
+ "\tpos_x : 0.0\n",
+ "\tpos_y : 0.0\n",
+ "\tpos_z : 0.0\n",
+ "\tdir_x : 0.0\n",
+ "\tdir_y : 0.0\n",
+ "\tdir_z : 0.0\n",
+ "\tpure_t : 0.0\n",
+ "\tpure_a : 0.0\n",
+ "\ttype : 0\n",
+ "\torigin : 0\n",
+ "\tpattern_flags : 0"
+ ]
+ },
+ "execution_count": 74,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r[0].hits[0]"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 76,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "806451572"
+ ]
+ },
+ "execution_count": 76,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r[0].hits[0].dom_id"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 77,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "<OfflineTracks: 10 parsed elements>"
+ ]
+ },
+ "execution_count": 77,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r.tracks"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 79,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "<ChunkedArray [[294.6407542676734 294.6407542676734 294.6407542676734 ... 67.81221253265059 67.7756405143316 67.77250505700384] [96.75133289411137 96.75133289411137 96.75133289411137 ... 39.21916536442286 39.184645826013806 38.870325146341884] [560.2775306614813 560.2775306614813 560.2775306614813 ... 118.88577278801066 118.72271313687405 117.80785995187605] ... [71.03251451148226 71.03251451148226 71.03251451148226 ... 16.714140573909347 16.444395245214945 16.34639241716669] [326.440133294878 326.440133294878 326.440133294878 ... 87.79818671079849 87.75488082571873 87.74839444768625] [159.77779654216795 159.77779654216795 159.77779654216795 ... 33.8669134999348 33.821631538334984 33.77240735670646]] at 0x7f249eed2590>"
+ ]
+ },
+ "execution_count": 79,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r.tracks.lik"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 80,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "<OfflineTracks: 56 parsed elements>"
+ ]
+ },
+ "execution_count": 80,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r[0].tracks"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 81,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
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+ " 72.81280833, 72.80229533, 72.78899435, 71.82404165,\n",
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+ " 70.85845637, 70.79081796, 70.76929743, 69.80667603,\n",
+ " 69.64058976, 68.93085058, 68.84304037, 68.83154232,\n",
+ " 68.79944298, 68.79019375, 68.78581291, 68.72340328,\n",
+ " 67.86628937, 67.81221253, 67.77564051, 67.77250506])"
+ ]
+ },
+ "execution_count": 81,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r[0].tracks.lik"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 83,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "offline track:\n",
+ "\tfUniqueID : 0\n",
+ "\tfBits : 33554432\n",
+ "\tid : 1\n",
+ "\tpos_x : 445.835395997812\n",
+ "\tpos_y : 615.1089636184813\n",
+ "\tpos_z : 125.1448339836911\n",
+ "\tdir_x : 0.0368711082700674\n",
+ "\tdir_y : -0.48653048395923415\n",
+ "\tdir_z : -0.872885221293917\n",
+ "\tt : 70311446.46401498\n",
+ "\tE : 99.10458562488608\n",
+ "\tlen : 0.0\n",
+ "\tlik : 294.6407542676734\n",
+ "\ttype : 0\n",
+ "\trec_type : 4000\n",
+ "\trec_stages : [1, 3, 5, 4]\n",
+ "\tstatus : 0\n",
+ "\tmother_id : -1\n",
+ "\thit_ids : []\n",
+ "\terror_matrix : []\n",
+ "\tcomment : 0\n",
+ "\tJGANDALF_BETA0_RAD : 0.004957442219414389\n",
+ "\tJGANDALF_BETA1_RAD : 0.003417848024252858\n",
+ "\tJGANDALF_CHI2 : -294.6407542676734\n",
+ "\tJGANDALF_NUMBER_OF_HITS : 142.0\n",
+ "\tJENERGY_ENERGY : 99.10458562488608\n",
+ "\tJENERGY_CHI2 : 1.7976931348623157e+308\n",
+ "\tJGANDALF_LAMBDA : 4.2409761837248484e-12\n",
+ "\tJGANDALF_NUMBER_OF_ITERATIONS : 10.0\n",
+ "\tJSTART_NPE_MIP : 24.88469697331908\n",
+ "\tJSTART_NPE_MIP_TOTAL : 55.88169412579765\n",
+ "\tJSTART_LENGTH_METRES : 98.89582506402911\n",
+ "\tJVETO_NPE : 0.0\n",
+ "\tJVETO_NUMBER_OF_HITS : 0.0\n",
+ "\tJENERGY_MUON_RANGE_METRES : 344.9767431592819\n",
+ "\tJENERGY_NOISE_LIKELIHOOD : -333.87773581129136\n",
+ "\tJENERGY_NDF : 1471.0\n",
+ "\tJENERGY_NUMBER_OF_HITS : 101.0"
+ ]
+ },
+ "execution_count": 83,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r[0].tracks[0]"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 85,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "294.6407542676734"
+ ]
+ },
+ "execution_count": 85,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r[0].tracks[0].lik"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 86,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "<OfflineHits: 10 parsed elements>"
+ ]
+ },
+ "execution_count": 86,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r.mc_hits"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 87,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ "<OfflineTracks: 10 parsed elements>"
+ ]
+ },
+ "execution_count": 87,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "r.mc_tracks."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "r.mc_hits."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "metadata": {},
+ "outputs": [],
+ "source": []
+ }
+ ],
+ "metadata": {
+ "kernelspec": {
+ "display_name": "Python 3",
+ "language": "python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.7.4"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 4
+}
diff --git a/notebooks/AanetReader_tutorial.ipynb b/notebooks/Reader_tutorial.ipynb
similarity index 75%
rename from notebooks/AanetReader_tutorial.ipynb
rename to notebooks/Reader_tutorial.ipynb
index 3a225d24ba811a5fe7897e8d9ff8712218e37970..808e5452d4a8f70f75f245b175ec6aea5147ba10 100644
--- a/notebooks/AanetReader_tutorial.ipynb
+++ b/notebooks/Reader_tutorial.ipynb
@@ -28,7 +28,7 @@
"metadata": {},
"outputs": [],
"source": [
- "from km3io import AanetReader"
+ "from km3io.aanet import Reader"
]
},
{
@@ -44,7 +44,7 @@
},
{
"cell_type": "code",
- "execution_count": 12,
+ "execution_count": 4,
"metadata": {
"scrolled": true
},
@@ -52,130 +52,16 @@
{
"data": {
"text/plain": [
- "Events keys are:\n",
- "\tid\n",
- "\tdet_id\n",
- "\tmc_id\n",
- "\trun_id\n",
- "\tmc_run_id\n",
- "\tframe_index\n",
- "\ttrigger_mask\n",
- "\ttrigger_counter\n",
- "\toverlays\n",
- "\thits\n",
- "\ttrks\n",
- "\tw\n",
- "\tw2list\n",
- "\tw3list\n",
- "\tmc_t\n",
- "\tmc_hits\n",
- "\tmc_trks\n",
- "\tcomment\n",
- "\tindex\n",
- "\tflags\n",
- "\tt.fSec\n",
- "\tt.fNanoSec\n",
- "Hits keys are:\n",
- "\thits.id\n",
- "\thits.dom_id\n",
- "\thits.channel_id\n",
- "\thits.tdc\n",
- "\thits.tot\n",
- "\thits.trig\n",
- "\thits.pmt_id\n",
- "\thits.t\n",
- "\thits.a\n",
- "\thits.pos.x\n",
- "\thits.pos.y\n",
- "\thits.pos.z\n",
- "\thits.dir.x\n",
- "\thits.dir.y\n",
- "\thits.dir.z\n",
- "\thits.pure_t\n",
- "\thits.pure_a\n",
- "\thits.type\n",
- "\thits.origin\n",
- "\thits.pattern_flags\n",
- "Tracks keys are:\n",
- "\ttrks.fUniqueID\n",
- "\ttrks.fBits\n",
- "\ttrks.usr_data\n",
- "\ttrks.usr_names\n",
- "\ttrks.id\n",
- "\ttrks.pos.x\n",
- "\ttrks.pos.y\n",
- "\ttrks.pos.z\n",
- "\ttrks.dir.x\n",
- "\ttrks.dir.y\n",
- "\ttrks.dir.z\n",
- "\ttrks.t\n",
- "\ttrks.E\n",
- "\ttrks.len\n",
- "\ttrks.lik\n",
- "\ttrks.type\n",
- "\ttrks.rec_type\n",
- "\ttrks.rec_stages\n",
- "\ttrks.status\n",
- "\ttrks.mother_id\n",
- "\ttrks.fitinf\n",
- "\ttrks.hit_ids\n",
- "\ttrks.error_matrix\n",
- "\ttrks.comment\n",
- "Mc hits keys are:\n",
- "\tmc_hits.id\n",
- "\tmc_hits.dom_id\n",
- "\tmc_hits.channel_id\n",
- "\tmc_hits.tdc\n",
- "\tmc_hits.tot\n",
- "\tmc_hits.trig\n",
- "\tmc_hits.pmt_id\n",
- "\tmc_hits.t\n",
- "\tmc_hits.a\n",
- "\tmc_hits.pos.x\n",
- "\tmc_hits.pos.y\n",
- "\tmc_hits.pos.z\n",
- "\tmc_hits.dir.x\n",
- "\tmc_hits.dir.y\n",
- "\tmc_hits.dir.z\n",
- "\tmc_hits.pure_t\n",
- "\tmc_hits.pure_a\n",
- "\tmc_hits.type\n",
- "\tmc_hits.origin\n",
- "\tmc_hits.pattern_flags\n",
- "Mc tracks keys are:\n",
- "\tmc_trks.fUniqueID\n",
- "\tmc_trks.fBits\n",
- "\tmc_trks.usr_data\n",
- "\tmc_trks.usr_names\n",
- "\tmc_trks.id\n",
- "\tmc_trks.pos.x\n",
- "\tmc_trks.pos.y\n",
- "\tmc_trks.pos.z\n",
- "\tmc_trks.dir.x\n",
- "\tmc_trks.dir.y\n",
- "\tmc_trks.dir.z\n",
- "\tmc_trks.t\n",
- "\tmc_trks.E\n",
- "\tmc_trks.len\n",
- "\tmc_trks.lik\n",
- "\tmc_trks.type\n",
- "\tmc_trks.rec_type\n",
- "\tmc_trks.rec_stages\n",
- "\tmc_trks.status\n",
- "\tmc_trks.mother_id\n",
- "\tmc_trks.fitinf\n",
- "\tmc_trks.hit_ids\n",
- "\tmc_trks.error_matrix\n",
- "\tmc_trks.comment"
+ "<Reader: 10 entries>"
]
},
- "execution_count": 12,
+ "execution_count": 4,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
- "reader = AanetReader(aanet_file)\n",
+ "reader = Reader(aanet_file)\n",
"reader"
]
},
@@ -189,8 +75,6 @@
"text/plain": [
"['trks.fUniqueID',\n",
" 'trks.fBits',\n",
- " 'trks.usr_data',\n",
- " 'trks.usr_names',\n",
" 'trks.id',\n",
" 'trks.pos.x',\n",
" 'trks.pos.y',\n",
@@ -219,7 +103,7 @@
}
],
"source": [
- "reader.tracks_keys"
+ "reader.keys.tracks_keys"
]
},
{
@@ -230,7 +114,7 @@
{
"data": {
"text/plain": [
- "<Table [<Row 0> <Row 1> <Row 2> ... <Row 7> <Row 8> <Row 9>] at 0x7f83f9d62c10>"
+ "<Table [<Row 0> <Row 1> <Row 2> ... <Row 7> <Row 8> <Row 9>] at 0x7fed2d98a750>"
]
},
"execution_count": 6,
@@ -240,7 +124,7 @@
],
"source": [
"# big lazyarray with ALL file data!\n",
- "lazy_data = reader._lazy_data\n",
+ "lazy_data = reader._data\n",
"lazy_data"
]
},
@@ -252,7 +136,7 @@
{
"data": {
"text/plain": [
- "<ChunkedArray [5971 5971 5971 ... 5971 5971 5971] at 0x7f83f9d2cdd0>"
+ "<ChunkedArray [5971 5971 5971 ... 5971 5971 5971] at 0x7fed2d91f9d0>"
]
},
"execution_count": 7,
@@ -309,7 +193,7 @@
},
{
"cell_type": "code",
- "execution_count": 15,
+ "execution_count": 10,
"metadata": {},
"outputs": [],
"source": [
@@ -330,16 +214,16 @@
},
{
"cell_type": "code",
- "execution_count": 14,
+ "execution_count": 11,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
- "<ChunkedArray [[806451572 806451572 806451572 ... 809544061 809544061 809544061] [806451572 806451572 806451572 ... 809524432 809526097 809544061] [806451572 806451572 806451572 ... 809544061 809544061 809544061] ... [806451572 806455814 806465101 ... 809526097 809544058 809544061] [806455814 806455814 806455814 ... 809544061 809544061 809544061] [806455814 806455814 806455814 ... 809544058 809544058 809544061]] at 0x7f83f9a13890>"
+ "<ChunkedArray [[806451572 806451572 806451572 ... 809544061 809544061 809544061] [806451572 806451572 806451572 ... 809524432 809526097 809544061] [806451572 806451572 806451572 ... 809544061 809544061 809544061] ... [806451572 806455814 806465101 ... 809526097 809544058 809544061] [806455814 806455814 806455814 ... 809544061 809544061 809544061] [806455814 806455814 806455814 ... 809544058 809544058 809544061]] at 0x7fed2d8af450>"
]
},
- "execution_count": 14,
+ "execution_count": 11,
"metadata": {},
"output_type": "execute_result"
}
@@ -352,7 +236,7 @@
},
{
"cell_type": "code",
- "execution_count": 16,
+ "execution_count": 12,
"metadata": {},
"outputs": [
{
@@ -371,7 +255,7 @@
" dtype=int32)"
]
},
- "execution_count": 16,
+ "execution_count": 12,
"metadata": {},
"output_type": "execute_result"
}
@@ -384,7 +268,7 @@
},
{
"cell_type": "code",
- "execution_count": 17,
+ "execution_count": 13,
"metadata": {},
"outputs": [
{
@@ -393,7 +277,7 @@
"60"
]
},
- "execution_count": 17,
+ "execution_count": 13,
"metadata": {},
"output_type": "execute_result"
}
@@ -407,7 +291,7 @@
},
{
"cell_type": "code",
- "execution_count": 18,
+ "execution_count": 14,
"metadata": {},
"outputs": [
{
@@ -416,7 +300,7 @@
"806455814"
]
},
- "execution_count": 18,
+ "execution_count": 14,
"metadata": {},
"output_type": "execute_result"
}
@@ -435,16 +319,16 @@
},
{
"cell_type": "code",
- "execution_count": 19,
+ "execution_count": 15,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
- "<ChunkedArray [[-0.872885221293917 -0.872885221293917 -0.872885221293917 ... -0.6631226836266504 -0.5680647731737454 -0.5680647731737454] [-0.8351996698137462 -0.8351996698137462 -0.8351996698137462 ... -0.7485107718446855 -0.8229838871876581 -0.239315690284641] [-0.989148723802379 -0.989148723802379 -0.989148723802379 ... -0.9350162572437829 -0.88545604390297 -0.88545604390297] ... [-0.5704611045902105 -0.5704611045902105 -0.5704611045902105 ... -0.9350162572437829 -0.4647231989130516 -0.4647231989130516] [-0.9779941383490359 -0.9779941383490359 -0.9779941383490359 ... -0.88545604390297 -0.88545604390297 -0.8229838871876581] [-0.7396916780974963 -0.7396916780974963 -0.7396916780974963 ... -0.6631226836266504 -0.7485107718446855 -0.7485107718446855]] at 0x7f83f9b65f90>"
+ "<ChunkedArray [[-0.872885221293917 -0.872885221293917 -0.872885221293917 ... -0.6631226836266504 -0.5680647731737454 -0.5680647731737454] [-0.8351996698137462 -0.8351996698137462 -0.8351996698137462 ... -0.7485107718446855 -0.8229838871876581 -0.239315690284641] [-0.989148723802379 -0.989148723802379 -0.989148723802379 ... -0.9350162572437829 -0.88545604390297 -0.88545604390297] ... [-0.5704611045902105 -0.5704611045902105 -0.5704611045902105 ... -0.9350162572437829 -0.4647231989130516 -0.4647231989130516] [-0.9779941383490359 -0.9779941383490359 -0.9779941383490359 ... -0.88545604390297 -0.88545604390297 -0.8229838871876581] [-0.7396916780974963 -0.7396916780974963 -0.7396916780974963 ... -0.6631226836266504 -0.7485107718446855 -0.7485107718446855]] at 0x7fed2d8b8850>"
]
},
- "execution_count": 19,
+ "execution_count": 15,
"metadata": {},
"output_type": "execute_result"
}
@@ -456,7 +340,7 @@
},
{
"cell_type": "code",
- "execution_count": 20,
+ "execution_count": 16,
"metadata": {},
"outputs": [
{
@@ -476,7 +360,7 @@
" -0.97094183])"
]
},
- "execution_count": 20,
+ "execution_count": 16,
"metadata": {},
"output_type": "execute_result"
}
@@ -489,7 +373,7 @@
},
{
"cell_type": "code",
- "execution_count": 21,
+ "execution_count": 17,
"metadata": {},
"outputs": [
{
@@ -498,7 +382,7 @@
"56"
]
},
- "execution_count": 21,
+ "execution_count": 17,
"metadata": {},
"output_type": "execute_result"
}
@@ -512,7 +396,7 @@
},
{
"cell_type": "code",
- "execution_count": 22,
+ "execution_count": 18,
"metadata": {},
"outputs": [
{
@@ -521,7 +405,7 @@
"-0.6024604933159441"
]
},
- "execution_count": 22,
+ "execution_count": 18,
"metadata": {},
"output_type": "execute_result"
}
@@ -552,5 +436,5 @@
}
},
"nbformat": 4,
- "nbformat_minor": 2
+ "nbformat_minor": 4
}