Add geane and pdf evaluator

.gitignore

-*.so
+# Byte-compiled / optimized / DLL files
+__pycache__/
 *.py[cod]
-*.egg-info
+*.pyxbldc
+
+# C extensions
+*.so
+
+# Distribution / packaging
+build/
+venv/
+dist/
 _build
 _generate
-build
-venv
-jppy/__init__.py
-jppy/version.py
 pip-wheel-metadata
-scratch
-pdfs
+*.egg-info
+*.egg
+
+# Version info
+src/jppy/version.py
+
+# Temporary folders and meta-data
+tmp/
+
+# Data folders
+pdfs/
+

pyproject.toml

 [build-system]
-requires = ["setuptools>=42", "wheel", "setuptools_scm[toml]>=3.4"]
+requires = ["setuptools>=42", "wheel", "setuptools_scm[toml]>=3.4", "pybind11>=2.6"]
+build-backend = "setuptools.build_meta"
 
 [tool.setuptools_scm]
-write_to = "jppy/version.py"
+write_to = "src/jppy/version.py"

scripts/get_pdfs.sh

 #!/usr/bin/env bash
 
-export URL="http://pi1139.physik.uni-erlangen.de/data/latest"
+export URL="http://sftp.km3net.de/data/latest/"
 if [ ! -d "pdfs" ]; then
     echo "Retrieving PDFs..."
     mkdir pdfs

setup.cfg

+[metadata]
+name = jppy
+description = "Jpp Python package"
+long_description = file: README.rst
+long_description_content_type = text/x-rst
+url = https://git.km3net.de/km3py/jppy
+author = Tamas Gal
+author_email = tgal@km3net.de
+maintainer = Tamas Gal
+maintainer_email = tgal@km3net.de
+license = MIT
+license_files = LICENSE
+classifiers =
+    Development Status :: 5 - Production/Stable
+    Intended Audience :: Developers
+    Intended Audience :: Science/Research
+    License :: OSI Approved :: BSD License
+    Operating System :: OS Independent
+    Programming Language :: C++
+    Programming Language :: Python
+    Programming Language :: Python :: 3
+    Programming Language :: Python :: 3 :: Only
+    Programming Language :: Python :: 3.6
+    Programming Language :: Python :: 3.7
+    Programming Language :: Python :: 3.8
+    Programming Language :: Python :: 3.9
+    Programming Language :: Python :: 3.10
+    Topic :: Scientific/Engineering
+keywords =
+    C++11
+    Python bindings
+    KM3NeT
+    muon
+    neutrino
+    shower
+    hadronic
+    electromagnetic
+    Photomultiplier tubes
+    probability density function
+
+[options]
+packages = find:
+install_requires =
+    pybind11>=2.4
+    setuptools>=40.6.2
+    setuptools_scm
+    toml
+python_requires = >=3.6
+include_package_data = True
+package_dir =
+    =src
+
+[build_ext]
+inplace=1
+
+[options.packages.find]
+where = src
+
+[options.extras_require]
+all =
+    ipykernel
+dev =
+    ipykernel
+    pytest
+    pytest-cov
+    pytest-flake8
+    pytest-pylint
+    pytest-watch
+    sphinx-gallery>=0.1.12
+    sphinx-rtd-theme>=0.3
+    sphinx>=1.6.3
+    sphinxcontrib-napoleon>=0.6.1
+    sphinxcontrib-programoutput>=0.11
+    sphinxcontrib-websupport>=1.0.1
+    sphinx-autoapi
+    twine
+    wheel
+
+[bdist_wheel]
+universal = 1
+
+[tool:pytest]
+junit_family = xunit2
+addopts = -vv -rs -Wd
+testpaths =
+    tests
+
+[check-manifest]
+ignore =
+    src/version.py
+

setup.py

+#!/usr/bin/env python3
 import os
 from setuptools import setup, Extension
 from setuptools.command.build_ext import build_ext
@@ -19,38 +20,13 @@ class get_pybind_include(object):
         import pybind11
         return pybind11.get_include(self.user)
 
-
+    
 def get_jpp_include():
     jpp_dir = os.getenv("JPP_DIR")
     if jpp_dir:
         return os.path.join(jpp_dir, "software")
-    return "jpp"
-
+    return "src/jpp"
 
-ext_modules = [
-    Extension(
-        'jppy.{}'.format(module),
-        ['src/{}.cc'.format(module)],
-        include_dirs=[
-            get_pybind_include(),
-            get_pybind_include(user=True),
-            get_jpp_include()
-        ],
-        language='c++') for module in ['pdf', 'npe']
-]
-
-# Populating the __init__.py with submodule imports, so that one can import
-# the package and use the submodules directly with the dot-sytax.
-with open("jppy/__init__.py", "w") as fobj:
-    fobj.write("""from pkg_resources import get_distribution, DistributionNotFound
-try:
-    version = get_distribution(__name__).version
-except DistributionNotFound:
-    version = "unknown version"
-""")
-    for module in ext_modules:
-        fobj.write("from . import {}\n".format(module.name.split('.')[1]))
-        
 
 # As of Python 3.6, CCompiler has a `has_flag` method.
 # cf http://bugs.python.org/issue26689
@@ -117,18 +93,23 @@ class BuildExt(build_ext):
         build_ext.build_extensions(self)
 
 
-setup(
-    name='jppy',
-    author='Tamas Gal',
-    author_email='tgal@km3net.de',
-    url='https://git.km3net.de/km3py/jppy',
-    description='Jpp Python Package',
-    packages=["jppy"],
-    long_description="jppy - Jpp Python Package",
-    ext_modules=ext_modules,
-    install_requires=['pybind11>=2.4'],
-    setup_requires=['pybind11>=2.4', 'setuptools_scm'],
-    use_scm_version=True,
-    cmdclass={'build_ext': BuildExt},
-    zip_safe=False,
-)
+if __name__ == '__main__':    
+
+    setup_args = dict(
+        ext_modules = [
+            Extension(
+                'jppy.{}'.format(module),
+                ['src/jppy/{}.cc'.format(module)],
+                include_dirs=[
+                    get_pybind_include(),
+                    get_pybind_include(user=True),
+                    get_jpp_include()
+                ],
+                language='c++') for module in ['constants', 'geane', 'pdf', 'npe']
+        ],
+        cmdclass = dict(
+            build_ext = BuildExt
+        )
+    )
+
+    setup(**setup_args)