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Resolve "Best way to get number of hit DOMs"

Merged Tamas Gal requested to merge 46-best-way-to-get-number-of-hit-doms into master
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Unreleased changes
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* ``km3io.tools.unique`` and ``km3io.tools.uniquecount`` were added to help
working with unique elements (e.g. DOM IDs or channel IDs)
* Internal restructuring of ``.tools``, ROOT related stuff is moved
to ``.rootio``
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