added test for the padding incl files

tests/data/KM3NeT_-00000001_20171212.detx

-20 v2
+-1 v2
 0.0 999999999999.9
 UTM WGS84 33N 587600.0 4016800.0 -3450.0
 2070

tests/test_extractor.py

@@ -14,12 +14,15 @@ test_dir = os.path.dirname(os.path.realpath(__file__))
 NEUTRINO_FILE = os.path.join(test_dir, "data", "mcv6_ORCA_test_rc.gsg_tauCClowE-CC_3-50GeV.km3sim.jterbr00008155.jorcarec.jsh.aanet.760.h5")
 DET_FILE_NEUTRINO = os.path.join(test_dir, "data", "KM3NeT_00000049_20200707.detx")
 
+NO_COMPLE_RECO_FILE = os.path.join(test_dir, "data", "arca_test_without_some_jmuon_recos.h5")
+ARCA_DETX = os.path.join(test_dir, "data", "KM3NeT_-00000001_20171212.detx")
 
 class TestStdRecoExtractor(TestCase):
     """ Assert that the neutrino info is extracted correctly. File has 18 events. """
 
     @classmethod
     def setUpClass(cls):
+        #normal case, with complete recos
         cls.proc = orcasong.core.FileGraph(
             max_n_hits=3,
             time_window=[0, 50],
@@ -38,6 +41,20 @@ class TestStdRecoExtractor(TestCase):
         cls.quantities_to_test = ["dir_z","dir_x","pos_x"]
         cls.mc_quantities_to_test = ["dir_z","dir_x","vertex_pos_x"]
         
+        #case where a few recos from jmuon are missing
+        cls.proc = orcasong.core.FileGraph(
+            max_n_hits=3,
+            time_window=[0, 50],
+            hit_infos=["pos_z", "time", "channel_id"],
+            extractor=extractors.get_neutrino_mc_info_extr(NO_COMPLE_RECO_FILE),
+            det_file=ARCA_DETX,
+            add_t0=True,
+            keep_event_info=True,
+        )
+        cls.outfile_arca = os.path.join(cls.tmpdir.name, "binned_arca.h5")
+        cls.proc.run(infile=NO_COMPLE_RECO_FILE, outfile=cls.outfile_arca)
+        cls.f_arca = h5py.File(cls.outfile_arca, "r")
+
     @classmethod
     def tearDownClass(cls):
         cls.f.close()
@@ -81,4 +98,18 @@ class TestStdRecoExtractor(TestCase):
             orig_mc_values = orig_mc_info[self.quantities_to_test[j]][0] #only take fist, the primary
             
             assert np.allclose(orig_mc_values,y[self.mc_quantities_to_test[j]][0])
-        
\ No newline at end of file
+    
+    def test_incomplete_reco_padding(self): 
+        
+        #make sure the x and y even in this case have the same length
+        x = self.f_arca["x"]
+        y = self.f_arca["y"]
+        
+        assert len(x) == len(y)
+    
+    
+    
+    
+    
+    
+    
\ No newline at end of file