no irods, clean installation

base/data_processing:1

-FROM docker.km3net.de/base/singularity-py3:3.5.3
+FROM python:3.8.1
   MAINTAINER Vladimir Kulikovskiy <vkulikovskiy@km3net.de>
+#Install Singularity as described on https://github.com/sylabs/singularity/blob/master/INSTALL.md
+  RUN apt-get update -qq && apt-get install -qq -y wget bzip2 python-pip git zsh libhdf5-dev
+  RUN apt-get install -qq -y build-essential libssl-dev uuid-dev libgpgme11-dev libseccomp-dev pkg-config squashfs-tools 
+  RUN export VERSION=1.14 OS=linux ARCH=amd64 && wget -q -O /tmp/go${VERSION}.${OS}-${ARCH}.tar.gz https://dl.google.com/go/go${VERSION}.${OS}-${ARCH}.tar.gz && \ 
+ tar -C /usr/local -xzf /tmp/go${VERSION}.${OS}-${ARCH}.tar.gz
+  RUN export GOPATH=${HOME}/go && mkdir -p ${GOPATH}/src/github.com/sylabs && cd ${GOPATH}/src/github.com/sylabs &&\ 
+ git clone https://github.com/sylabs/singularity.git && cd singularity && git checkout v3.5.3-rc.2
+  RUN export GOPATH=${HOME}/go && export PATH=/usr/local/go/bin:${PATH}:${GOPATH}/bin && cd ${GOPATH}/src/github.com/sylabs/singularity && ./mconfig && cd ./builddir && make && make install
+
+#Install basic python modules
+  RUN pip install -U pip setuptools wheel
+
+  RUN pip install numpy
+  RUN pip install scipy pandas sklearn statsmodels numba numexpr tables h5py
+  RUN pip install pytest pytest-cov docopt sphinx sphinx-gallery
+  RUN pip install matplotlib seaborn pillow ipython jupyter notebook pillow
+
+
+#Set the go environment 
+   RUN echo '\
+ export GOPATH=${HOME}/go\n\
+ export PATH=/usr/local/go/bin:${PATH}:${GOPATH}/bin'\
+     >> /etc/profile.d/go_env.sh
+
+ CMD ["/bin/zsh"]
+
 
  RUN echo 'debconf debconf/frontend select Noninteractive' | debconf-set-selections
  RUN apt-get install -qq -y apt-utils
@@ -7,7 +33,7 @@ FROM docker.km3net.de/base/singularity-py3:3.5.3
  RUN zsh -c 'apt-get install -qq -y environment-modules'
  RUN apt-get install -qq -y sed
 
- RUN git clone https://$KM3NET_USERNAME:$KM3NET_USERNAME@git.km3net.de/common/irods-legacy && cd irods-legacy && \
-    sed -i 's/\$thisUserID == //' ./iRODS/scripts/perl/*pl && \
-    cd iRODS && ./scripts/configure && make && mkdir -p /opt/bin && cp clients/icommands/bin/* /opt/bin && \
-    cd / && rm -rf irods-legacy
+ #RUN git clone https://$KM3NET_USERNAME:$KM3NET_USERNAME@git.km3net.de/common/irods-legacy && cd irods-legacy && \
+ #   sed -i 's/\$thisUserID == //' ./iRODS/scripts/perl/*pl && \
+ #   cd iRODS && ./scripts/configure && make && mkdir -p /opt/bin && cp clients/icommands/bin/* /opt/bin && \
+ #   cd / && rm -rf irods-legacy